Increasing information from shotgun proteomic data by accounting for misassigned precursor ion massesSCHERL, Alexander; TSAI, Yihsuan Shannon; SHATTER, Scott A et al.Proteomics (Weinheim. Print). 2008, Vol 8, Num 14, pp 2791-2797, issn 1615-9853, 7 p.Article

Characterization of peptides and proteins in commercial HSA solutionsGAY, Marina; CARRASCAL, Montserrat; GORGA, Marina et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 2, pp 172-181, issn 1615-9853, 10 p.Article

Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data setsDEUTSCH, Eric W; SHTEYNBERG, David; AEBERSOLD, Ruedi et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 6, pp 1190-1195, issn 1615-9853, 6 p.Article

Shotgun proteomic profiling of five species of New Zealand PachycladonMIRZAEI, Mehdi; PASCOVICI, Dana; KEIGHLEY, Tim et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 1, pp 166-171, issn 1615-9853, 6 p.Article

Search engine processor: Filtering and organizing peptide spectrum matchesCARVALHO, Paulo C; FISCHER, Juliana S. G; TAO XU et al.Proteomics (Weinheim. Print). 2012, Vol 12, Num 7, pp 944-949, issn 1615-9853, 6 p.Article

Scaffold: A bioinformatic tool for validating MS/MS- based proteomic studiesSEARLE, Brian C.Proteomics (Weinheim. Print). 2010, Vol 10, Num 6, pp 1265-1269, issn 1615-9853, 5 p.Article

Can the false-discovery rate be misleading?BARBOZA, Rodrigo; COCIORVA, Daniel; TAO XU et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 20, pp 4105-4108, issn 1615-9853, 4 p.Article

A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factorsWEBB-ROBERTSON, Bobbie-Jo M; MATZKE, Melissa M; JACOBS, Jon M et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 24, pp 4736-4741, issn 1615-9853, 6 p.Article

Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteinsBLACKLER, Adele R; SPEERS, Anna E; WU, Christine C et al.Proteomics (Weinheim. Print). 2008, Vol 8, Num 19, pp 3956-3964, issn 1615-9853, 9 p.Article

Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric modelJIE MA; JIYANG ZHANG; SONGFENG WU et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 23, pp 4293-4300, issn 1615-9853, 8 p.Article

Less label, more free: Approaches in label-free quantitative mass spectrometryNEILSON, Karlie A; ALI, Naveid A; MURALIDHARAN, Sridevi et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 4, pp 535-553, issn 1615-9853, 19 p.Article

Labeling elastase digests with TMT: Informational gain by identification of poorly detectable peptides with MALDI-TOF/TOF mass spectrometryBAEUMLISBERGER, Dominic; ARREY, Tabiwang N; RIETSCHEL, Benjamin et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 21, pp 3905-3909, issn 1615-9853, 5 p.Article

A novel fractionation method of the rough ER integral membrane proteins; Resident proteins versus exported proteins?SAKAI, Kumiko; HAMANAKA, Ryoji; YUKI, Hideo et al.Proteomics (Weinheim. Print). 2009, Vol 9, Num 11, pp 3036-3046, issn 1615-9853, 11 p.Article

Serially coupled microcolumn reversed phase liquid chromatography for shotgun proteomic analysisDINGYIN TAO; GUIJIE ZHU; LIANGLIANG SUN et al.Proteomics (Weinheim. Print). 2009, Vol 9, Num 7, pp 2029-2036, issn 1615-9853, 8 p.Article

Survey of the camel urinary proteome by shotgun proteomics using a multiple database search strategyALHAIDER, AbdulqaderA; BAYOUMY, Nervana; ARGO, Evelyn et al.Proteomics (Weinheim. Print). 2012, Vol 12, Num 22, pp 3403-3406, issn 1615-9853, 4 p.Article

The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analysesFRIEDMAN, David B; ANDACHT, Tracy M; SETTLAGE, Robert E et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 8, pp 1371-1381, issn 1615-9853, 11 p.Article

Proteomic analysis of temperature stress in plantsNEILSON, Karlie A; GAYANI GAMMULLA, C; MIRZAEI, Mehdi et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 4, pp 828-845, issn 1615-9853, 18 p.Article

Proteomic analysis of mitochondria from Caenorhabditis elegansJING LI; TANXI CAI; YATES, John R et al.Proteomics (Weinheim. Print). 2009, Vol 9, Num 19, pp 4539-4553, issn 1615-9853, 15 p.Article

Comparison between procedures using SDS for shotgun proteomic analyses of complex samplesBEREMAN, Michael S; EGERTSON, Jarrett D; MACCOSS, Michael J et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 14, pp 2931-2935, issn 1615-9853, 5 p.Article

Characterization of the proteomes associating with three distinct membrane raft sub-types in murine spermASANO, Atsushi; NELSON, Jacquelyn L; SHENG ZHANG et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 19, pp 3494-3505, issn 1615-9853, 12 p.Article

Proteomic analysis of human gastric juice: A shotgun approachLIANG, Cynthia R. M. Y; TAN, Sandra; HWEE TONG TAN et al.Proteomics (Weinheim. Print). 2010, Vol 10, Num 21, pp 3928-3931, issn 1615-9853, 4 p.Article

iTRAQ quantitative analysis of Francisella tularensis ssp. holarctica live vaccine strain and Francisella tularensis ssp. tularensis SCHU S4 response to different temperatures and stationary phases of growthLENCO, Juraj; LINK, Marek; TAMBOR, Vojtech et al.Proteomics (Weinheim. Print). 2009, Vol 9, Num 10, pp 2875-2882, issn 1615-9853, 8 p.Article

Strategies to recover proteins from ocular tissues for proteomicsPATEL, Nikhil; SOLANKI, Ekta; PICCIANI, Renata et al.Proteomics (Weinheim. Print). 2008, Vol 8, Num 5, pp 1055-1070, issn 1615-9853, 16 p.Article

The rat sperm proteome characterized via IPG strip prefractionation and LC-MS/MS identificationBAKER, Mark A; HETHERINGTON, Louise; REEVES, Gabi et al.Proteomics (Weinheim. Print). 2008, Vol 8, Num 11, pp 2312-2321, issn 1615-9853, 10 p.Article

Accurate mass comparison coupled with two endopeptidases enables identification of protein terminiKISHIMOTO, Taro; KONDO, Jun; TAKAI-IGARASHI, Takako et al.Proteomics (Weinheim. Print). 2011, Vol 11, Num 3, pp 485-489, issn 1615-9853, 5 p.Article